Plastidial Acyl Carrier Protein [partical sequence]

Plastidial Acyl Carrier Protein[partical sequence]

Protein 1 - acyl carrier protein 1 precursor (ACP)

Camelina Protein Sequences
>contig15591 length=507 numreads=32 YTPPSPPPPSLYLSLDRSLVINETMATQFSASVSMQTTCLATTRISFQKPALISNNGRTNLSFNLRPARRLSVSCAAKQETIDKVSEIVKKQLSLAADQKVTAATKFAELGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELMQEKK*FSIFTSCYIT

Camelina Nucleotide Sequence
>contig15591 length=507 numreads=32 TACACTCCGCCCTCTcCTcCCCCCCCATCGCTCTATCtCTCTCTCGACAGATCTCTCGTGATTAACGaAACAATGGCGACTCAATTCAGCGCTTCTGTCTCCATGCAAACTACTTGTCTGGCAACAACGAGGATTAGTTTCCAAAAGCCtgCTTTGAtTTCCAACAATGGAAGGACCAAtCTCTCCTTCAACCTGCGCCCTGCTCGTCGCCTTTCAGTCtCTTGCGCGGCGAAACAAGAGACCATAGACAAAGTGTCTGAgATTGTCAAGAAGCAACTatCACTTGCAGCgGATCAAAAAGTCACTGCCGCTACCAAATTTGCTGAGCTTGGAGCAGATTCTCTCGACACGGTTGAGATAGTGATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCGGAAGAGAAAGCACAGAAGATTGCAACAGTGGAGCAAGCTGCTGAACTCATTGAAGAGCTCATGCAAGAgAAGAAGTAATTTAGTATTTTTACAAGCTGCTACATAAcC

Arabidopsis Orthologous Sequences
>gi|15229875|ref|NP_187153.1| ACP1 (acyl carrier protein 1); acyl carrier [Arabidopsis thaliana] MATQFSASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEKK
>At3g05020-Protein
MATQFSASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEKK*

Matching Arabidopsis Sequences from Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)

>At3g05020-Gene ATGGCGACTCAATTCAGCGCTTCTGTCTCATTGCAAACTTCTTGTCTGGTAATCAAATCTTCTTCTTTCATTTTAACAATTGCCTTAGAGATCGCTTTGATCTTACGATTCATGATCATTTCCCGTTGTTTCCATGCCTGCTCTTGTTATCGTATATAAACTCCTGACGCATGTTTATTATGTGTAACATAGAAGATCTTCGCTTTAGTAATGATCAGTTTTATGTTTTTGTTCCAATGATTTTATTTCTAGTTTCAAATTCTGTGATCGGCAACACATGGAATTAAAATCCGTGGTTTTGTGTTCTGGTTGTAATCTAGATCTACAGTCAATTGAATTTATGATTGTGGAAGTGAATGCTTACTTTTGGCTGTGAATAATTGTGCATGGACATTCATTGGCTAAGAATTTGGCTTGAGTTATGAAAATTCAGAACAAAGTTCTTATGAATGCAATGCTTTTTTTTTTTGTGTGTGTTTGATGAAACAAATAGGCAACAACAAGGATTAGTTTCCAAAAGCCAGCTTTGATTTCCAACCATGGAAAGACTAATCTATCCTTCAACCTCCGCCGTTCAATCCCATCTCGCCGCCTCTCTGTTTCTTGCGCGGTATGAGCATTTTTTTTCAAGTTTGTTAATCTATATATATAGGGCTCAAAGTTTTAAAAGACATTATATTTGGTTTATAGGCAAAACAAGAGACGATAGAGAAAGTGTCTGCTATAGTTAAGAAGCAACTATCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGATTCTCTCGACACGGTATCCATTCACTCAAGTGGCAATTAACACAAATTCTTAATTTTCTTGATACTGATCAACTGAGTGTTTTTCTTCAGGTTGAGATAGTAATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCCGAAGAGAAAGCACAGAAGATTG >At3g05020-ORF ATGGCGACTCAATTCAGCGCTTCTGTCTCATTGCAAACTTCTTGTCTGGCAACAACAAGGATTAGTTTCCAAAAGCCAGCTTTGATTTCCAACCATGGAAAGACTAATCTATCCTTCAACCTCCGCCGTTCAATCCCATCTCGCCGCCTCTCTGTTTCTTGCGCGGCAAAACAAGAGACGATAGAGAAAGTGTCTGCTATAGTTAAGAAGCAACTATCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGATTCTCTCGACACGGTTGAGATAGTAATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCCGAAGAGAAAGCACAGAAGATTGCCACAGTTGAGCAAGCTGCTGAACTCATTGAAGAGCTCATCAACGAGAAGAAGTAA

Right click here to download alligned nucleotide or protein sequences.



Protein 2 - ACP2

Camelina Protein Sequences
(Sequence lies outside of ORF, but matches with GENE. No similar protein sequence was found)

Camelina Nucleotide Sequence (does not overlap with the ORF, just the Gene)
>contig47164 length=335 numreads=50 GAAGGTGGAAGTAAAATAtGTTTTAgAAGAaAGATAATAAAGTCAAAACAAGCCTTGTAATAATATTACCAAAatAGCATAAATCTCAAtAGACACAATCGCTCTCTAGCTAACGAAACAATGAGACTGATAATTTTGTTgTTGgTAATGGTAATAAACGATTTCTACTTGGCCTTTTCCAACAAGAGCTCcTCGATAAGCTCAGCTGCTTTCTCAACTGTGgTGATTGTCTGTGCTTTCTCCTCAGCCATTTCGATCCCAAACTCTTCCTCTAGTCCCATCACAATCTCCACCGTGTCGAGAGAATCAGCACCAAGATCAACAAATTTGGTGGC

Arabidopsis Orthologous Sequences
>gi|6624607|emb|CAB63798.1| acyl carrier protein [Arabidopsis thaliana] MASIAASASISLQARPRQLVSLFPRISHLVLLVLLWQAIAASQVKSFSNGRRSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKAK

Matching Arabidopsis Sequences from Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)

>At1g54580-Gene TCCGCCTCCTTCAATCTCACTCCGATCTCTCTACGATTCATTCGTTCTATGGCTTCCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGTCTCTCTCTTCCCTCGAATCTCTCATCTTGTTTTACTTGTTTTGCTGTAGATCTGATCTGATTGATTGTTGTTCTTCTTCTTCAATTGTAGATCTAATTTGCAGAATCGTTTTCTGAGTTCTAGGTTGATTTGTTTAGGTGGCTCTATGATTTAGTTTTCTGGAACTTTGGCTCTGTAGATCTGATGAATCTGTTTTACTATTCTCCGTTGCTAATCACCGGAATAATTGTTGATTTCTCGTCGAATTGAATCACATAGATTTTAGTTGCTTCTGTTTAACTTCTCTCGTAGATTGTTTCGTTATTTTGGTTTGATGCTTTGCATTACGAGTTTAACTTTGTACTGATGGCAGGCGATCGCGGCTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAGCAGTCTTTCTTTTAATCTCCGCCAGCTTCCTACCCGCTTGACTGTTTCCTGCGCTGTAAGACTTTGTTTTTTGCTTTCTCGAGCCTGTTCAACAATGTGATTAGGCTCTTTGATACGTTTGGGTGATTGGTTGATATATATCTCCATTTTTTTATTGTTGTGTAAACAGGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTATAGCTTAACAACCTTCTCGATGTCTAATAATTGGATTCAACTTTTGAAATGGGATTGTTCATTGGACTTATTGATGCTTAATCAATGCCTCTTAAAAATTGTATCCTGCTTTCAAGCTCATATTGTCGAATGTTTTAGATTGCAAGTCTTGTAAAGGGTCGCTGTGTCTCCTTATACGCAGCTCTTTAGTATTGTTACTGATACAGGCAAATATATAGGACATACTCAAACACATACTTCACAAGCAATGCATTTATCAAATTCAAAATGGATTCGAACGTGTGCACATACTCATGACTCGGCGTTTTGGATTTCAGGTGGAGATTGTGATGGGACTAGAGGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAGTTGAGCAAGCAGCTGCGCTCATTGAGGAGCTCTTGTTTGAAAAGGCCAAGTAGAATATCTTTATTACATTAGCAAAAACGAAAAAAATCAAAACCCAAACCACTATCTTATTGTTTCGTTAGCTAGAGAGCAATTGTGTCTGTTGAAAGATTTTATGTTATTTTGGGGAAATTATTACAAGGCTTGTATCTGACTTTTATCTTTCTTCTAAAACATTTTACTTTCAGCCTTCATCAAACTCTCTTA >At1g54580-ORF ATGGCTTCCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGCGATCGCGGCTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAGCAGTCTTTCTTTTAATCTCCGCCAGCTTCCTACCCGCTTGACTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTGGAGATTGTGATGGGACTAGAGGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAGTT

Right click here to download alligned nucleotide sequences.



Protein 3 -hypothetical protein

Camelina Protein Sequences
>contig29855 length=511 numreads=12 DAVSTYLSYSHYTLSN*SESISTLFSSPSMASLSTTSLSFKAPSTRISQVLKKGSSFQSVTFGRFTSSTSKSLRLQISCAAKAETVQKVSDIVKEQLALTADTPLTAESKFTALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLIEDLVQKKPAA*TS*TL

Camelina Nucleotide Sequence
>contig29855 length=511 numreads=12 GgACGCCGTATCTACGTATCTCTCTTATTCTCATTACACCTTATCCAaCTAAAGCGAATCCATTTCTACtCTTttttCATCTCCTtcAATGGCTTCCTTATcAACCACgtCTCTAAGCTTCAAAGCTCCGTCcACCAGAATCTCTCAGGTGTTAaagAAAGGCTCAAGTTTtCAGTCTGTgaCCTTTGGTCGTTTCaCGTCTTCAACTTCAAAGAGCCTTCGTCTTCAAATCAGTtGTGCAGCGAAAGCAGAGACGGTGCaGAAAGTGAGTGACATTGTAAAGGAGCAATTGGCTTTGACaGCGGACACTCCCCTCACTGCCGAATCCAAGTTCACTGCTCTTGGTGCCGATTCTCTCGACACCGTGGAAATAGTGATGGCGTTGGAGGAAAaGTTCAACATAAGTGTGgAGGAATCTGATGCTCAAAaCaTTACGACgaTCCAAGAGGCGgCaGATTTGATTGAGGACCTTgTtCAGAAGAAaCCTGCGgCcTAAACTtCTtGAActCTT

Arabidopsis Orthologous Sequences
>gi|15234875|ref|NP_194235.1| ACP4 (acyl carrier protein 4); acyl carrier [Arabidopsis thaliana] MASLSTTSLSFKAPSTTISQVLRKASSSQSVTFGRFTSSTKSLRLQISCAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLIEDLVQKKPAAETS

Matching Arabidopsis Sequences from Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)

>At1g54630-Gene TCCGCCTCCTCCGATCTCACTCCGATCTCTCTACGATTCATTCTTCTATGGCTTCCATTGCTACTTCTGCTTCTACTTCTCTCCAAGCTCGTCCTCGTCAACTGGTCTCTCTTTTCTCTTCTTCCCTCGAATCTCTCATCTTTTTCTTACTGAATTTTTGTCGTGATTTCTCCCATTTTGCTATAGATCTGATCTGATTCATCTCGACCTAGTTGTTCTTCTTCTTCTTCAACTGTAGATCTAATTCGCAGAATCGTTTTCTCATCTCTATATTGATCTGTTGAAATTGCTCTGTAATTCATTTTTTGTCCTGTAATTTTTTTGCATTGAGGTAAGTTAGTTTTCGTTTTCTGGAATTTTAGGCTCTGTTGAACCTATTTTACTTAACTCGGTCGAATCACCGGAAAAATTATCCTATTCCTCTTCGAATTGGATTTGTTTTATATCTGAATTTGAATAGATTCGAACTCTTGGTAAGAGCATGCGGGTTACATAGATTTTAGTTGCTTTTGTTTCCTTCTTTTGGTTTGTTTCAGTGCAAATATATTGCTTTGCATTTGGAGTTTAGTTTTGTACTGATGGAAAGTTATATTCGAATATGATGGCAGGTGATTGGGGCTAAACAAGTTAAAAGCTTTAGCTATGGAAGCAGAAGCAATCTTTCTTTTAATCTTCGCCAGCTTCCTACCCGCTTGACTGTTTACTGCGCTGTAAGACCTTGTCTCTTCTCTCATATGATGTTGTTTCTATTTTACTTTTGATCTCTCGAGCCAATTCATCATTCACCATTGTTGATTGTTGATAAACAGGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTCAAAGAGGCTGACGAAATTACCGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTAACTACTTTCTCATGTCTAATAATTGGATTCAACTTTTGAAATGGGATTGTTCATTGGACTTATTGATGCATAATCAATGCCTCTTTAAACTTGTATCCTGCTTTCAAGCTCATATTGTCGAATGTTTAGATTGCAAGTCTTGTGAAGGATCGCTGCTTCTCCTTATACACACATCTCTAAACATGTTACTGAGATACACATACTCATGATTCTTGTTATATTGTTATGGACGTACTCATGCTTCGTGTGTCGGGGTTCCAGGTGGAGATAGTTATGGGATTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCTATCGCCACAGTTGAGCAAGCAGCTGCACTCATTGAGGAGCTCTTGTTGGAAAAGGCCAAGTAGAAAATCCTTTACTACATTAGCAAAAACGAAAAAAACCAAAACCCAAACCACTATCTTCTTATTGTTTGGTTAGCTAGAGAGCAATTGTGTCCGTTGAGATTTTATGCTATTTTCGGATAATTATTACAAGGCTTGTATTTTAATATTTACTTTCGTCTGAAACATTTTACTTTCA ATGGCTTCCTTATCAACCACTTCCCTAAGCTTCAAAGCTCCGTCCACCACAATTTCACAGGTAATTTAACAAATTCTTCTCATAAATCTCAGTGTACAGTTTGTTCTCATTCTTTTTTTTTGGAAGGAGTCTTAATCTCAACATATATAGTTTCTTTGTCGTAAACATTTCTCTTAACTATAATTTAAGGGTGGATCCTGTTATTTATCAGGTTTTAAGGAAAGCCTCAAGTTCTCAGTCTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCGTAAGTAATCATTTTGACTGAAGCTAAAATTTAAATTATATGAGAAATGCGATAAGTTAATTGTAGTATCGTGTGAGTGTACCTACAGGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTGGCTTTAGCTGCTGATGTTCCGCTCACTGCTGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTCGACACCGTATGTTACACTCTCTCTGTTTCATATCATTGTCATGTTATATTTCCTCTGTTTCATAATGATCTGATGTTTGAGAATTAAGCAAAAATATCATTACCTCAATGCAAAAATATGAATTTTCTGTTCTGATTGGTTACTTTTGTGTTATAAGTTAGTAGTTACTCTTTAAGATTGTTGGGTGAATATGGATGCAGGTGGAGATAGTGATGGCGTTGGAGGAAAAGTTTAACATAAGTGTGGAGGAATCTGATGCTCAAAACATTACGACCATCCAAGAGGCGGCTGATTTGATAGAGGACCTTGTTCAAAAGAAACCCGCGGCGGAAAC >At1g54630-ORF ATGGCTTCCATTGCTACTTCTGCTTCTACTTCTCTCCAAGCTCGTCCTCGTCAACTGGTGATTGGGGCTAAACAAGTTAAAAGCTTTAGCTATGGAAGCAGAAGCAATCTTTCTTTTAATCTTCGCCAGCTTCCTACCCGCTTGACTGTTTACTGCGCTGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTCAAAGAGGCTGACGAAATTACCGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTGGAGATAGTTATGGGATTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCTATCGCCACAGTT ATGGCTTCCTTATCAACCACTTCCCTAAGCTTCAAAGCTCCGTCCACCACAATTTCACAGGTTTTAAGGAAAGCCTCAAGTTCTCAGTCTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTGGCTTTAGCTGCTGATGTTCCGCTCACTGCTGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTCGACACCGTGGAGATAGTGATGGCGTTGGAGGAAAAGTTTAACATAAGTGTGGAGGAATCTGATGCTCAAAACATTACGACCATCCAAGAGGCG

Right click here to download alligned nucleotide or protein sequences.


last updated by Jason Macrander 6/9/2010