Plastidial Acyl Carrier Protein [partical sequence]
Plastidial Acyl Carrier Protein[partical sequence]
Protein 1 - acyl carrier protein 1 precursor (ACP)
Camelina Protein Sequences
>contig15591 length=507 numreads=32
YTPPSPPPPSLYLSLDRSLVINETMATQFSASVSMQTTCLATTRISFQKPALISNNGRTNLSFNLRPARRLSVSCAAKQETIDKVSEIVKKQLSLAADQKVTAATKFAELGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELMQEKK*FSIFTSCYIT
Camelina Nucleotide Sequence
>contig15591 length=507 numreads=32
TACACTCCGCCCTCTcCTcCCCCCCCATCGCTCTATCtCTCTCTCGACAGATCTCTCGTGATTAACGaAACAATGGCGACTCAATTCAGCGCTTCTGTCTCCATGCAAACTACTTGTCTGGCAACAACGAGGATTAGTTTCCAAAAGCCtgCTTTGAtTTCCAACAATGGAAGGACCAAtCTCTCCTTCAACCTGCGCCCTGCTCGTCGCCTTTCAGTCtCTTGCGCGGCGAAACAAGAGACCATAGACAAAGTGTCTGAgATTGTCAAGAAGCAACTatCACTTGCAGCgGATCAAAAAGTCACTGCCGCTACCAAATTTGCTGAGCTTGGAGCAGATTCTCTCGACACGGTTGAGATAGTGATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCGGAAGAGAAAGCACAGAAGATTGCAACAGTGGAGCAAGCTGCTGAACTCATTGAAGAGCTCATGCAAGAgAAGAAGTAATTTAGTATTTTTACAAGCTGCTACATAAcC
Arabidopsis Orthologous Sequences
>gi|15229875|ref|NP_187153.1| ACP1 (acyl carrier protein 1); acyl carrier [Arabidopsis thaliana]
MATQFSASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEKK
>At3g05020-Protein
MATQFSASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEKK*
Matching Arabidopsis Sequences from
Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)
>At3g05020-Gene
ATGGCGACTCAATTCAGCGCTTCTGTCTCATTGCAAACTTCTTGTCTGGTAATCAAATCTTCTTCTTTCATTTTAACAATTGCCTTAGAGATCGCTTTGATCTTACGATTCATGATCATTTCCCGTTGTTTCCATGCCTGCTCTTGTTATCGTATATAAACTCCTGACGCATGTTTATTATGTGTAACATAGAAGATCTTCGCTTTAGTAATGATCAGTTTTATGTTTTTGTTCCAATGATTTTATTTCTAGTTTCAAATTCTGTGATCGGCAACACATGGAATTAAAATCCGTGGTTTTGTGTTCTGGTTGTAATCTAGATCTACAGTCAATTGAATTTATGATTGTGGAAGTGAATGCTTACTTTTGGCTGTGAATAATTGTGCATGGACATTCATTGGCTAAGAATTTGGCTTGAGTTATGAAAATTCAGAACAAAGTTCTTATGAATGCAATGCTTTTTTTTTTTGTGTGTGTTTGATGAAACAAATAGGCAACAACAAGGATTAGTTTCCAAAAGCCAGCTTTGATTTCCAACCATGGAAAGACTAATCTATCCTTCAACCTCCGCCGTTCAATCCCATCTCGCCGCCTCTCTGTTTCTTGCGCGGTATGAGCATTTTTTTTCAAGTTTGTTAATCTATATATATAGGGCTCAAAGTTTTAAAAGACATTATATTTGGTTTATAGGCAAAACAAGAGACGATAGAGAAAGTGTCTGCTATAGTTAAGAAGCAACTATCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGATTCTCTCGACACGGTATCCATTCACTCAAGTGGCAATTAACACAAATTCTTAATTTTCTTGATACTGATCAACTGAGTGTTTTTCTTCAGGTTGAGATAGTAATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCCGAAGAGAAAGCACAGAAGATTG
>At3g05020-ORF
ATGGCGACTCAATTCAGCGCTTCTGTCTCATTGCAAACTTCTTGTCTGGCAACAACAAGGATTAGTTTCCAAAAGCCAGCTTTGATTTCCAACCATGGAAAGACTAATCTATCCTTCAACCTCCGCCGTTCAATCCCATCTCGCCGCCTCTCTGTTTCTTGCGCGGCAAAACAAGAGACGATAGAGAAAGTGTCTGCTATAGTTAAGAAGCAACTATCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGATTCTCTCGACACGGTTGAGATAGTAATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCCGAAGAGAAAGCACAGAAGATTGCCACAGTTGAGCAAGCTGCTGAACTCATTGAAGAGCTCATCAACGAGAAGAAGTAA
Right click here to download alligned
nucleotide
or
protein
sequences.
Protein 2 - ACP2
Camelina Protein Sequences
(Sequence lies outside of ORF, but matches with GENE. No similar protein sequence was found)
Camelina Nucleotide Sequence (does not overlap with the ORF, just the Gene)
>contig47164 length=335 numreads=50
GAAGGTGGAAGTAAAATAtGTTTTAgAAGAaAGATAATAAAGTCAAAACAAGCCTTGTAATAATATTACCAAAatAGCATAAATCTCAAtAGACACAATCGCTCTCTAGCTAACGAAACAATGAGACTGATAATTTTGTTgTTGgTAATGGTAATAAACGATTTCTACTTGGCCTTTTCCAACAAGAGCTCcTCGATAAGCTCAGCTGCTTTCTCAACTGTGgTGATTGTCTGTGCTTTCTCCTCAGCCATTTCGATCCCAAACTCTTCCTCTAGTCCCATCACAATCTCCACCGTGTCGAGAGAATCAGCACCAAGATCAACAAATTTGGTGGC
Arabidopsis Orthologous Sequences
>gi|6624607|emb|CAB63798.1| acyl carrier protein [Arabidopsis thaliana]
MASIAASASISLQARPRQLVSLFPRISHLVLLVLLWQAIAASQVKSFSNGRRSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKAK
Matching Arabidopsis Sequences from
Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)
>At1g54580-Gene
TCCGCCTCCTTCAATCTCACTCCGATCTCTCTACGATTCATTCGTTCTATGGCTTCCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGTCTCTCTCTTCCCTCGAATCTCTCATCTTGTTTTACTTGTTTTGCTGTAGATCTGATCTGATTGATTGTTGTTCTTCTTCTTCAATTGTAGATCTAATTTGCAGAATCGTTTTCTGAGTTCTAGGTTGATTTGTTTAGGTGGCTCTATGATTTAGTTTTCTGGAACTTTGGCTCTGTAGATCTGATGAATCTGTTTTACTATTCTCCGTTGCTAATCACCGGAATAATTGTTGATTTCTCGTCGAATTGAATCACATAGATTTTAGTTGCTTCTGTTTAACTTCTCTCGTAGATTGTTTCGTTATTTTGGTTTGATGCTTTGCATTACGAGTTTAACTTTGTACTGATGGCAGGCGATCGCGGCTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAGCAGTCTTTCTTTTAATCTCCGCCAGCTTCCTACCCGCTTGACTGTTTCCTGCGCTGTAAGACTTTGTTTTTTGCTTTCTCGAGCCTGTTCAACAATGTGATTAGGCTCTTTGATACGTTTGGGTGATTGGTTGATATATATCTCCATTTTTTTATTGTTGTGTAAACAGGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTATAGCTTAACAACCTTCTCGATGTCTAATAATTGGATTCAACTTTTGAAATGGGATTGTTCATTGGACTTATTGATGCTTAATCAATGCCTCTTAAAAATTGTATCCTGCTTTCAAGCTCATATTGTCGAATGTTTTAGATTGCAAGTCTTGTAAAGGGTCGCTGTGTCTCCTTATACGCAGCTCTTTAGTATTGTTACTGATACAGGCAAATATATAGGACATACTCAAACACATACTTCACAAGCAATGCATTTATCAAATTCAAAATGGATTCGAACGTGTGCACATACTCATGACTCGGCGTTTTGGATTTCAGGTGGAGATTGTGATGGGACTAGAGGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAGTTGAGCAAGCAGCTGCGCTCATTGAGGAGCTCTTGTTTGAAAAGGCCAAGTAGAATATCTTTATTACATTAGCAAAAACGAAAAAAATCAAAACCCAAACCACTATCTTATTGTTTCGTTAGCTAGAGAGCAATTGTGTCTGTTGAAAGATTTTATGTTATTTTGGGGAAATTATTACAAGGCTTGTATCTGACTTTTATCTTTCTTCTAAAACATTTTACTTTCAGCCTTCATCAAACTCTCTTA
>At1g54580-ORF
ATGGCTTCCATTGCTGCTTCTGCTTCTATTTCCCTTCAAGCTCGTCCTCGCCAACTGGCGATCGCGGCTAGTCAAGTTAAAAGCTTTAGCAATGGAAGAAGAAGCAGTCTTTCTTTTAATCTCCGCCAGCTTCCTACCCGCTTGACTGTTTCCTGCGCTGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTTAAAGAGGCTGACGAAATTACTGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTGGAGATTGTGATGGGACTAGAGGAAGAGTTCGGGATTGAAATGGCGGAGGAGAAAGCACAGTCAATCGCCACAGTT
Right click here to download alligned
nucleotide
sequences.
Protein 3 -hypothetical protein
Camelina Protein Sequences
>contig29855 length=511 numreads=12
DAVSTYLSYSHYTLSN*SESISTLFSSPSMASLSTTSLSFKAPSTRISQVLKKGSSFQSVTFGRFTSSTSKSLRLQISCAAKAETVQKVSDIVKEQLALTADTPLTAESKFTALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLIEDLVQKKPAA*TS*TL
Camelina Nucleotide Sequence
>contig29855 length=511 numreads=12
GgACGCCGTATCTACGTATCTCTCTTATTCTCATTACACCTTATCCAaCTAAAGCGAATCCATTTCTACtCTTttttCATCTCCTtcAATGGCTTCCTTATcAACCACgtCTCTAAGCTTCAAAGCTCCGTCcACCAGAATCTCTCAGGTGTTAaagAAAGGCTCAAGTTTtCAGTCTGTgaCCTTTGGTCGTTTCaCGTCTTCAACTTCAAAGAGCCTTCGTCTTCAAATCAGTtGTGCAGCGAAAGCAGAGACGGTGCaGAAAGTGAGTGACATTGTAAAGGAGCAATTGGCTTTGACaGCGGACACTCCCCTCACTGCCGAATCCAAGTTCACTGCTCTTGGTGCCGATTCTCTCGACACCGTGGAAATAGTGATGGCGTTGGAGGAAAaGTTCAACATAAGTGTGgAGGAATCTGATGCTCAAAaCaTTACGACgaTCCAAGAGGCGgCaGATTTGATTGAGGACCTTgTtCAGAAGAAaCCTGCGgCcTAAACTtCTtGAActCTT
Arabidopsis Orthologous Sequences
>gi|15234875|ref|NP_194235.1| ACP4 (acyl carrier protein 4); acyl carrier [Arabidopsis thaliana]
MASLSTTSLSFKAPSTTISQVLRKASSSQSVTFGRFTSSTKSLRLQISCAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLIEDLVQKKPAAETS
Matching Arabidopsis Sequences from
Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)
>At1g54630-Gene
TCCGCCTCCTCCGATCTCACTCCGATCTCTCTACGATTCATTCTTCTATGGCTTCCATTGCTACTTCTGCTTCTACTTCTCTCCAAGCTCGTCCTCGTCAACTGGTCTCTCTTTTCTCTTCTTCCCTCGAATCTCTCATCTTTTTCTTACTGAATTTTTGTCGTGATTTCTCCCATTTTGCTATAGATCTGATCTGATTCATCTCGACCTAGTTGTTCTTCTTCTTCTTCAACTGTAGATCTAATTCGCAGAATCGTTTTCTCATCTCTATATTGATCTGTTGAAATTGCTCTGTAATTCATTTTTTGTCCTGTAATTTTTTTGCATTGAGGTAAGTTAGTTTTCGTTTTCTGGAATTTTAGGCTCTGTTGAACCTATTTTACTTAACTCGGTCGAATCACCGGAAAAATTATCCTATTCCTCTTCGAATTGGATTTGTTTTATATCTGAATTTGAATAGATTCGAACTCTTGGTAAGAGCATGCGGGTTACATAGATTTTAGTTGCTTTTGTTTCCTTCTTTTGGTTTGTTTCAGTGCAAATATATTGCTTTGCATTTGGAGTTTAGTTTTGTACTGATGGAAAGTTATATTCGAATATGATGGCAGGTGATTGGGGCTAAACAAGTTAAAAGCTTTAGCTATGGAAGCAGAAGCAATCTTTCTTTTAATCTTCGCCAGCTTCCTACCCGCTTGACTGTTTACTGCGCTGTAAGACCTTGTCTCTTCTCTCATATGATGTTGTTTCTATTTTACTTTTGATCTCTCGAGCCAATTCATCATTCACCATTGTTGATTGTTGATAAACAGGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTCAAAGAGGCTGACGAAATTACCGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTAACTACTTTCTCATGTCTAATAATTGGATTCAACTTTTGAAATGGGATTGTTCATTGGACTTATTGATGCATAATCAATGCCTCTTTAAACTTGTATCCTGCTTTCAAGCTCATATTGTCGAATGTTTAGATTGCAAGTCTTGTGAAGGATCGCTGCTTCTCCTTATACACACATCTCTAAACATGTTACTGAGATACACATACTCATGATTCTTGTTATATTGTTATGGACGTACTCATGCTTCGTGTGTCGGGGTTCCAGGTGGAGATAGTTATGGGATTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCTATCGCCACAGTTGAGCAAGCAGCTGCACTCATTGAGGAGCTCTTGTTGGAAAAGGCCAAGTAGAAAATCCTTTACTACATTAGCAAAAACGAAAAAAACCAAAACCCAAACCACTATCTTCTTATTGTTTGGTTAGCTAGAGAGCAATTGTGTCCGTTGAGATTTTATGCTATTTTCGGATAATTATTACAAGGCTTGTATTTTAATATTTACTTTCGTCTGAAACATTTTACTTTCA
ATGGCTTCCTTATCAACCACTTCCCTAAGCTTCAAAGCTCCGTCCACCACAATTTCACAGGTAATTTAACAAATTCTTCTCATAAATCTCAGTGTACAGTTTGTTCTCATTCTTTTTTTTTGGAAGGAGTCTTAATCTCAACATATATAGTTTCTTTGTCGTAAACATTTCTCTTAACTATAATTTAAGGGTGGATCCTGTTATTTATCAGGTTTTAAGGAAAGCCTCAAGTTCTCAGTCTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCGTAAGTAATCATTTTGACTGAAGCTAAAATTTAAATTATATGAGAAATGCGATAAGTTAATTGTAGTATCGTGTGAGTGTACCTACAGGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTGGCTTTAGCTGCTGATGTTCCGCTCACTGCTGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTCGACACCGTATGTTACACTCTCTCTGTTTCATATCATTGTCATGTTATATTTCCTCTGTTTCATAATGATCTGATGTTTGAGAATTAAGCAAAAATATCATTACCTCAATGCAAAAATATGAATTTTCTGTTCTGATTGGTTACTTTTGTGTTATAAGTTAGTAGTTACTCTTTAAGATTGTTGGGTGAATATGGATGCAGGTGGAGATAGTGATGGCGTTGGAGGAAAAGTTTAACATAAGTGTGGAGGAATCTGATGCTCAAAACATTACGACCATCCAAGAGGCGGCTGATTTGATAGAGGACCTTGTTCAAAAGAAACCCGCGGCGGAAAC
>At1g54630-ORF
ATGGCTTCCATTGCTACTTCTGCTTCTACTTCTCTCCAAGCTCGTCCTCGTCAACTGGTGATTGGGGCTAAACAAGTTAAAAGCTTTAGCTATGGAAGCAGAAGCAATCTTTCTTTTAATCTTCGCCAGCTTCCTACCCGCTTGACTGTTTACTGCGCTGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTCAAAGAGGCTGACGAAATTACCGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTGGAGATAGTTATGGGATTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCTATCGCCACAGTT
ATGGCTTCCTTATCAACCACTTCCCTAAGCTTCAAAGCTCCGTCCACCACAATTTCACAGGTTTTAAGGAAAGCCTCAAGTTCTCAGTCTGTGACCTTTGGTCGTTTCACGTCTTCAACAAAGAGCCTTCGTCTTCAAATCAGTTGTGCCGCGAAAGCAGAGACGGTGCAGAAAGTGAGTGACATTGTAAAAGAACAATTGGCTTTAGCTGCTGATGTTCCGCTCACTGCTGAATCCAAGTTCTCTGCTCTTGGTGCCGATTCTCTCGACACCGTGGAGATAGTGATGGCGTTGGAGGAAAAGTTTAACATAAGTGTGGAGGAATCTGATGCTCAAAACATTACGACCATCCAAGAGGCG
Right click here to download alligned
nucleotide
or
protein
sequences.
last updated by Jason Macrander 6/9/2010