Plastidial Hydroxyacyl-ACP Dehydrase[partial sequence]

Plastidial Hydroxyacyl-ACP Dehydrase[partical sequence]

Camelina Protein Sequences (with an alternative Assembly)
>contig37910 length=853 numreads=118 [matches to ORF] *GISNGDGHQ*DTRDFASQIPVSVSG*SDRVHGWCICCSY*ERYN***FLSWHFPERPIMPGVLMVEAMAQVGGIVMLQPEVGGSKSNFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGNSLVCEGEFLMAMGKEE*SHIHPFASSSYGPCGC*LVVTP*FESHFSLQFKDVCCIL*LY*KGTSV**AQKEKCKVGLVTFYGYTQRDNLCLGWKKLGRCGC*R*ELGGYRKMPEKDWLQSKADLGRRRFLQRLRRRRMGPTRIV*VCL

Camelina Nucleotide Sequence
>contig02733 length=293 numreads=7 [matches to Gene...but no Protein Sequence..perhaps after stop Codon?] aAAGCTTATGTgGGTGGCGCtTTGGtTTGCGAAGGCGAGTTCATGATGGtTTCTGCTGGTAGTTCtTGATCTCACCCTTTAATGGTCTCACTTGCCACATGCTAATCtTTTAATGCtTCtTCTTTCATTCCAAATAGTAGACAAGACCAAGCTTTATGATTTGGACATTTGTATGAGCTTCTTATGTCCTTTGTGTCTTTATTGCTGTCTTCTGTTGGTAAGACGATTCATGAGAGATAAATACAGATTGTGATTTGAAAACCAtATTCATACAATAGATCATAAATTTGGTT >contig37910 length=853 numreads=118 [matches to ORF] TATGAGGCATTTCCAACGGTGATGGACATCAAtAAGATACAAGAGATTTTGCCTCACAGATTCCCGTTTCTGTTAGTGGATAGAGTGATAGAGTACACGGCTGGTGTATCTGCtGTAGCTATTAAgAACGTTACAAtTAATGATAATTTCTTTCCTGGCATTTCCCTGAGAGGCCTATAATGCCTGGAGtTCTCATGGTTGAGGCCATGGCTCAGGTGGGAGGTATAGTGATGCTACAACCAGAAGTTGGTGGATCGAAAAGCAACTTCTTCTTTGcCGGAATCGACAAAGTCAGGTTCAGAAAGCCTGTGATTGCAGGTGAtACTCTTGTGATGAgGaTGACGCTTGTGAAGTTGCAGAAGCGGTTTGGGATAGCGAAAATGGAAGGGAAAGCATATGTAgGtAACTCTTTgGtATGTGaAGGaGAGTTCTTGATGGCTATgGGaAAAGAAGAGTGAtcTCACatTCAcCCCTTTGctTCtTCTTCATACgGGCCtTGTGGCTGCTAAtTAGTcGTCACAcCCtgaTTTGAGTCTCATTTCTctCTTCaATTTAAAGATGTTTGtTgCATATTATGATTATaTTAAAAAGGAACTTCAGtTTAGTAAGcTcaaaaagaaaaatGTAAAGTGGGTCTAGTaACGTTCTATGGTTACACACAAAGAGACAACCTTTGTCTCGGTTGGAAGAAACTAGGCCGTTGTGGTTGCTGACGGTGAGAGTTAGGTGGATACCGCaAAATGCCAGaAAAGGATTGGCTACAGAGTAAGGCAGATTTAGGCCGACgaCGATTCTTGCAGCGGCTAAGACGGCGGCGAATGGGGCCCACAAGAATAGTATGAGTGTGTTTAAA

Arabidopsis Orthologous Sequences
>gi|21592599|gb|AAM64548.1| putative beta-hydroxyacyl-ACP dehydratase [Arabidopsis thaliana] MATTSNSVLFLSSDSLIHHHHHQPLHLSSSRSHSVSLPPNKRSNSLTLRCSTNGDSTSTEKETPIELKFPAFPTVMDINQIREILPHRFPFLLVDRVIEYAPGVSAVAINNVTINDNFFPGHFPERPIMPGVLMIEAMAQVGGIVMLQPEVGGSQDNFFFAGIDKVRFRKPVIAGDTLVMRMTLLKFQKRFGLAKMEGKAYVGGALVCEGEFMMVSAGSS >gi|15238069|ref|NP_196578.1| beta-hydroxyacyl-ACP dehydratase, putative [Arabidopsis thaliana] MAASSSVFTVSPSRNLAAIPLHQSLSPPLLRSSSVAFRPKRRSSSLVLCSTDESKSTAEKEIPIELRYEAFPTVMDINKIQEILPHRFPFLLVDRVIEYTAGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGIVMLQPEVGGSRSNFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGNSVVCEGEFLMAMGKEE

Matching Arabidopsis Sequences from Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)

>At2g22230-Gene ACCTGCAAAAACAACATCTCTCACATTCTCTCTAAACTCTCTTCACTGTTACTCGACAATGGCTACTACTTCTAACTCGGTACTTTTCCTAAGTTCTGACTCACTGATTCATCATCATCATCATCAACCTCTCCATCTATCTTCCTCCAGATCTCACTCTGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCAACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAGTAAGATTTTTCTCTCGATTTCTAATGTTTCCGACATTCGTCATTCTCTTACTCAATCTGTTTCTCTTAATCCCCAGAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTATAAAATATTCATAAGACTTCAACTTTCGGTGATTTGATGAGTTTTCGTTGAAACCCATGTTTGAAGTTTTGATCTTTCTGGAATTTGACATTATGGTTCTTGGATTTTAGGTTTCCGTTTCTGCTGGTAGATAGAGTGATAGAGTATACGCCTGGTGTTTCAGCTGTAGCTATTAAGAATGTCACCATCAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCATGATTGAGGTAATAATAATCGTTTAAAGTTGCAAACTTTTGTCCTCAAGAAGATCAAATATTTTGTAATTGATATGTTAGCTGTTGTATTCCTTTCAAAATGCTTTAATGTTCGCTACTGTTTTAATCGAAGATGGATGTTAACTATGATAAGAGGTTAATGATCTGCTAGTTTGGATTCTGAATCCTGATAGATTAGCGCGAGATCTTCACCTGGTTGGTAATTGAATTGTCCTTCTGTGGTCTGATAGAGTGATGAGTATATTATAGTTGAGGGACTTCAACTTCACTTTGCTAAAAACTTGATCCAAAATGTGTGAAGCTATCTGCAGCTTTGATACTGAAAACTCGAGTCTGCGTAGTAGAAATATGCAACTTTAAGCTTGAAAGAGGTTAATGATCTCGCTAATTTGGTAGAGGTTTTGGATTCTGAATCCCGATAGAGGATCACAGATCCTCTATAAAAAAGATAACCGCCATATGGTTGAGTATTAATGTCTTGAAGATCATTTCACTGAAAAGTCAGAGTTTGTGTATTGCAGGCAATGGCGCAAGTCGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTCTCAAGATAACTTCTTCTTTGCTGGTATTGATAAAGTGAGATTTCGCAAACCAGTGATTGCAGGAGACACGCTAGTCATGAGGATGACTCTTCTCAAGTTCCAGAAGCGGTTCGGGCTCGCTAAAATGGAAGGTAAAGCTTATGTGGGTGGTGCTCTGGTGTGTGAAGGCGAGTTCATGATGGTTTCTGCTGGTAGTTCTTGATCTCACCCATTAATGGTCTCACTTCCCACATGTGGACTCTTCTTATGCTTCTTCTGTTATTCGAAAATCTAGACAAGACAGCTTTATGTTTTCGACATTTATATGAGCTACTTTTGCCCTTCGTGTCTTTATTGCTGTCTCCAATTTATGAACATTCATAAGATACAAATACAGAG >At2g22230-ORF ATGGCTACTACTTCTAACTCGGTACTTTTCCTAAGTTCTGACTCACTGATTCATCATCATCATCATCAACCTCTCCATCTATCTTCCTCCAGATCTCACTCTGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCAACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTTTCCGTTTCTGCTGGTAGATAGAGTGATAGAGTATACGCCTGGTGTTTCAGCTGTAGCTATTAAGAATGTCACCATCAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCATGATTGAGGCAATGGCGCAAGTCGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTCTCAAGATAACTTCTTCTTTGCTGGTATTGATAAAGTGAGATTTCGCAAACCAGTGATTGCAGGAGACACGCTAGTCATGAGGATGACTCTTCTCAAGTTCCAGAAGCGGTTCGGGCTCGCTAAAATGGAAGGTAAAGCTTATGTGGGTGGTGCTCTGGTGTGTGAAGGCGAGTTCATGATGGTTTCTGCTGGTAGTTCT

Right click here to download alligned nucleotide 1 [Gene] , nucleotide 2 [ORF]or protein sequences.

last updated by Jason Macrander 6/8/2010