Plastidial Hydroxyacyl-ACP Dehydrase[partial sequence]
Plastidial Hydroxyacyl-ACP Dehydrase[partical sequence]
Camelina Protein Sequences (with an alternative Assembly)
>contig37910 length=853 numreads=118 [matches to ORF]
*GISNGDGHQ*DTRDFASQIPVSVSG*SDRVHGWCICCSY*ERYN***FLSWHFPERPIMPGVLMVEAMAQVGGIVMLQPEVGGSKSNFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGNSLVCEGEFLMAMGKEE*SHIHPFASSSYGPCGC*LVVTP*FESHFSLQFKDVCCIL*LY*KGTSV**AQKEKCKVGLVTFYGYTQRDNLCLGWKKLGRCGC*R*ELGGYRKMPEKDWLQSKADLGRRRFLQRLRRRRMGPTRIV*VCL
Camelina Nucleotide Sequence
>contig02733 length=293 numreads=7 [matches to Gene...but no Protein Sequence..perhaps after stop Codon?]
aAAGCTTATGTgGGTGGCGCtTTGGtTTGCGAAGGCGAGTTCATGATGGtTTCTGCTGGTAGTTCtTGATCTCACCCTTTAATGGTCTCACTTGCCACATGCTAATCtTTTAATGCtTCtTCTTTCATTCCAAATAGTAGACAAGACCAAGCTTTATGATTTGGACATTTGTATGAGCTTCTTATGTCCTTTGTGTCTTTATTGCTGTCTTCTGTTGGTAAGACGATTCATGAGAGATAAATACAGATTGTGATTTGAAAACCAtATTCATACAATAGATCATAAATTTGGTT
>contig37910 length=853 numreads=118 [matches to ORF]
TATGAGGCATTTCCAACGGTGATGGACATCAAtAAGATACAAGAGATTTTGCCTCACAGATTCCCGTTTCTGTTAGTGGATAGAGTGATAGAGTACACGGCTGGTGTATCTGCtGTAGCTATTAAgAACGTTACAAtTAATGATAATTTCTTTCCTGGCATTTCCCTGAGAGGCCTATAATGCCTGGAGtTCTCATGGTTGAGGCCATGGCTCAGGTGGGAGGTATAGTGATGCTACAACCAGAAGTTGGTGGATCGAAAAGCAACTTCTTCTTTGcCGGAATCGACAAAGTCAGGTTCAGAAAGCCTGTGATTGCAGGTGAtACTCTTGTGATGAgGaTGACGCTTGTGAAGTTGCAGAAGCGGTTTGGGATAGCGAAAATGGAAGGGAAAGCATATGTAgGtAACTCTTTgGtATGTGaAGGaGAGTTCTTGATGGCTATgGGaAAAGAAGAGTGAtcTCACatTCAcCCCTTTGctTCtTCTTCATACgGGCCtTGTGGCTGCTAAtTAGTcGTCACAcCCtgaTTTGAGTCTCATTTCTctCTTCaATTTAAAGATGTTTGtTgCATATTATGATTATaTTAAAAAGGAACTTCAGtTTAGTAAGcTcaaaaagaaaaatGTAAAGTGGGTCTAGTaACGTTCTATGGTTACACACAAAGAGACAACCTTTGTCTCGGTTGGAAGAAACTAGGCCGTTGTGGTTGCTGACGGTGAGAGTTAGGTGGATACCGCaAAATGCCAGaAAAGGATTGGCTACAGAGTAAGGCAGATTTAGGCCGACgaCGATTCTTGCAGCGGCTAAGACGGCGGCGAATGGGGCCCACAAGAATAGTATGAGTGTGTTTAAA
Arabidopsis Orthologous Sequences
>gi|21592599|gb|AAM64548.1| putative beta-hydroxyacyl-ACP dehydratase [Arabidopsis thaliana]
MATTSNSVLFLSSDSLIHHHHHQPLHLSSSRSHSVSLPPNKRSNSLTLRCSTNGDSTSTEKETPIELKFPAFPTVMDINQIREILPHRFPFLLVDRVIEYAPGVSAVAINNVTINDNFFPGHFPERPIMPGVLMIEAMAQVGGIVMLQPEVGGSQDNFFFAGIDKVRFRKPVIAGDTLVMRMTLLKFQKRFGLAKMEGKAYVGGALVCEGEFMMVSAGSS
>gi|15238069|ref|NP_196578.1| beta-hydroxyacyl-ACP dehydratase, putative [Arabidopsis thaliana]
MAASSSVFTVSPSRNLAAIPLHQSLSPPLLRSSSVAFRPKRRSSSLVLCSTDESKSTAEKEIPIELRYEAFPTVMDINKIQEILPHRFPFLLVDRVIEYTAGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGIVMLQPEVGGSRSNFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAYVGNSVVCEGEFLMAMGKEE
Matching Arabidopsis Sequences from
Arabidopsis Lipid Metabolism Website
(Open Reading Frame and Gene)
>At2g22230-Gene
ACCTGCAAAAACAACATCTCTCACATTCTCTCTAAACTCTCTTCACTGTTACTCGACAATGGCTACTACTTCTAACTCGGTACTTTTCCTAAGTTCTGACTCACTGATTCATCATCATCATCATCAACCTCTCCATCTATCTTCCTCCAGATCTCACTCTGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCAACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAGTAAGATTTTTCTCTCGATTTCTAATGTTTCCGACATTCGTCATTCTCTTACTCAATCTGTTTCTCTTAATCCCCAGAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTATAAAATATTCATAAGACTTCAACTTTCGGTGATTTGATGAGTTTTCGTTGAAACCCATGTTTGAAGTTTTGATCTTTCTGGAATTTGACATTATGGTTCTTGGATTTTAGGTTTCCGTTTCTGCTGGTAGATAGAGTGATAGAGTATACGCCTGGTGTTTCAGCTGTAGCTATTAAGAATGTCACCATCAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCATGATTGAGGTAATAATAATCGTTTAAAGTTGCAAACTTTTGTCCTCAAGAAGATCAAATATTTTGTAATTGATATGTTAGCTGTTGTATTCCTTTCAAAATGCTTTAATGTTCGCTACTGTTTTAATCGAAGATGGATGTTAACTATGATAAGAGGTTAATGATCTGCTAGTTTGGATTCTGAATCCTGATAGATTAGCGCGAGATCTTCACCTGGTTGGTAATTGAATTGTCCTTCTGTGGTCTGATAGAGTGATGAGTATATTATAGTTGAGGGACTTCAACTTCACTTTGCTAAAAACTTGATCCAAAATGTGTGAAGCTATCTGCAGCTTTGATACTGAAAACTCGAGTCTGCGTAGTAGAAATATGCAACTTTAAGCTTGAAAGAGGTTAATGATCTCGCTAATTTGGTAGAGGTTTTGGATTCTGAATCCCGATAGAGGATCACAGATCCTCTATAAAAAAGATAACCGCCATATGGTTGAGTATTAATGTCTTGAAGATCATTTCACTGAAAAGTCAGAGTTTGTGTATTGCAGGCAATGGCGCAAGTCGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTCTCAAGATAACTTCTTCTTTGCTGGTATTGATAAAGTGAGATTTCGCAAACCAGTGATTGCAGGAGACACGCTAGTCATGAGGATGACTCTTCTCAAGTTCCAGAAGCGGTTCGGGCTCGCTAAAATGGAAGGTAAAGCTTATGTGGGTGGTGCTCTGGTGTGTGAAGGCGAGTTCATGATGGTTTCTGCTGGTAGTTCTTGATCTCACCCATTAATGGTCTCACTTCCCACATGTGGACTCTTCTTATGCTTCTTCTGTTATTCGAAAATCTAGACAAGACAGCTTTATGTTTTCGACATTTATATGAGCTACTTTTGCCCTTCGTGTCTTTATTGCTGTCTCCAATTTATGAACATTCATAAGATACAAATACAGAG
>At2g22230-ORF
ATGGCTACTACTTCTAACTCGGTACTTTTCCTAAGTTCTGACTCACTGATTCATCATCATCATCATCAACCTCTCCATCTATCTTCCTCCAGATCTCACTCTGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCAACAAATGGCGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAAATTCCCAGCATTTCCAACGGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTTTCCGTTTCTGCTGGTAGATAGAGTGATAGAGTATACGCCTGGTGTTTCAGCTGTAGCTATTAAGAATGTCACCATCAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCATGATTGAGGCAATGGCGCAAGTCGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTCTCAAGATAACTTCTTCTTTGCTGGTATTGATAAAGTGAGATTTCGCAAACCAGTGATTGCAGGAGACACGCTAGTCATGAGGATGACTCTTCTCAAGTTCCAGAAGCGGTTCGGGCTCGCTAAAATGGAAGGTAAAGCTTATGTGGGTGGTGCTCTGGTGTGTGAAGGCGAGTTCATGATGGTTTCTGCTGGTAGTTCT
Right click here to download alligned
nucleotide 1 [Gene]
,
nucleotide 2 [ORF]or
protein
sequences.
last updated by Jason Macrander 6/8/2010